Publications

Highlights

(For a full list see below or go to Google Scholar)

Full List

2017

MHC-I genotype restricts the oncogenic mutational landscape
Marty R, Kaabinejadian S, Rossell D, Slifker MJ, van de Haar J, Engin HB, de Prisco N, Ideker T, Hildebrand WH, Font-Burgada J, Carter H
Cell (2017) (In press)

3D collagen architecture induces vascular mimicry through an integrin b1 mediated migratory and transcriptional response
Ortiz D, Tsui B, Goshia T, Chute-Ricker C, Han A, Carter H, Fraley SI
Nature Communications (2017) (In Press)

Circulating tumour DNA methylation markers for diagnosis and prognosis of hepatocellular carcinoma
Xu R, Wei W,Krawczyk M, Wang W, Luo H, Flagg K, Yi S, Shi W, Li K, Zheng L, Zhang H, Caughey BA, Zhao Q, Hou J, Zhang R, Xu Y, Cai H, Li G, Hou R, Zhong Z, Lin D, Fu X, Zhu J, Duan Y, Zhang E, Zhang C, Li O, Carter H, Zhu J, Hao X, Zhang K
Nature Materials (2017) (In Press)

Modeling of RAS Complexes Supports Roles in Cancer for Less Studied Partners
Engin B, Carlin D, Pratt D, Carter H
BMC Biophysics Aug 11;10(1):5 (2017)

Pan-Cancer Analysis Reveals Technical Artifacts in The Cancer Genome Atlas (TCGA) Germline Variant Call
Buckley AR, Standish KA, Bhutani K, Ideker T, Harismendy O, Carter H, Schork NJ.
BMC Genomics Jun 12;18(1):458. (2017)

Interaction landscape of inherited polymorphisms with somatic events in cancer
Carter H, Marty R, Hofree M, Gross A, Jensen J, Fisch K, Wu X, DeBoever C, Van Nostrand E, Song Y, Wheeler E, Kreisberg J, Lippman S, Yeo G, Gutkind S, Ideker T
Cancer Discovery Apr 1;7(4):410-23 (2017)

2016

Immune DNA signature of T-Cell infiltration in breast tumor exomes
Levy E, Marty R, Garate-Calderon V, Woo B, Dow M, Armisen R, Carter H, Harismendy O
Scientific Reports (2016)

Challenges in identifying cancer genes by analysis of exome sequencing data
Hofree M, Carter H, Kreisberg J, Bandyopadhyay S, Mischel P, Friend S, Ideker T
Nature Communications Jul 15;7:12096 (2016)

Structure-based Analysis Reveals Cancer Missense Mutations Target Protein Interaction Interfaces
Engin B, Kreisberg J, Carter H
PLoS One Apr 4;11(4):e0152929 (2016)

2015

Periportal Hybrid Hepatocytes Regenerate the Injured Liver without Giving Rise to Cancer
Font-Burgada J, Shalapour S, Ramaswamy S, Hsueh B, Rossell D, Umemura A, Taniguchi K, Nakagawa H, Valasek M, Ye L, Kopp JL, Sander M, Carter H, Deisseroth K, Verma I and Karin M
Cell, 162(4), 766-779 (2015)

Identifying Mutation-Specific Cancer Pathways Using a Structurally Resolved Protein Interaction Network
Engin B, Hofree M, Carter H
Pac Symp Biocomput. 84-95 (2015)